
Boutique hotel vacation rentals in Shinjuku
Find and book unique boutique hotels on Airbnb
Top-rated boutique hotels in Shinjuku
Guests agree: these boutique hotel rentals are highly rated for location, cleanliness, and more.
Vacation rentals for every style
Get the amount of space that is right for you.
Popular amenities for Shinjuku boutique hotels
Family-friendly boutique hotels

Cozy Loft Room with Noh Art Vibes – Near JR Otsuka

No Service Hotel 301 / 7 min to Asakusa

5 min walk to Skytree Station, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

4F Shin-Okachimachi: A charming city where you can enjoy both the city center and downtown. Asakusa Ueno: The starting point of the Asakusa downtown area. Former Asakusa

Cozy studio perfect for single and couples stay

New hotel/Compact Twin/2 people

Shinjuku 15mins! Max 4ppl! No charge until 2ppl!

Newly opened hotel-style t suite Subway 3 minutes
Boutique hotels with a patio

Asakusa Direct 2 Bathrooms Skytree Station 5 Minutes Walk 2 Suites Airport Direct Kitchen Washing Machine Amin Hotel

Max 10 people, 2 bathrooms, 2 suites, elevator, 5 min walk to Skytree station, direct access to airport, kitchen, washing machine

4 bedrooms, 4 bathrooms, 4 washing machines, 4 kitchens, direct access to the airport, washing machine, elevator building, 5 minutes walk to Skytree station

3 sets of bathrooms MAX14 people Skytree station 5 minutes 3 suite airport direct access to kitchen washing machine elevator

5 min walk to Skytree Station, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

Shibuya Direct 5 to Skytree Subway Hike 2 Suites 2 Bathroom Airport Direct Access to Kitchen Washing Machine Elevator

Direct access to the airport, 5 minutes walk to Skytree Station, 2 suites, 2 bathrooms, kitchen, washing machine, elevator, Amin Hotel

TheMillennialsShibuya/Smart Pod Girls Only/1 Guest
Other boutique hotel vacation rentals

PEGASUS HOTEL (Japanese room) 502

2nd Floor Artistic Twin Room Inspired by Noh Dream

4 single beds in Tokyo/2 train stations: Studio B

全新開幕!2房1廳+吧台廚房!4-5人家庭房!浅草寺景觀!陽台晴空塔夜景!直通羽田&成田機場!

PEGASUS HOTEL (Western Style room) 301

Modern queen suite with private bathroom - rooftop

PEGASUS HOTEL (Western Style room) 401

The Barn Tokyo - < Double room >
Quick stats about boutique hotel rentals in Shinjuku
Total rentals
30 properties
Nightly prices starting at
$70 CAD before taxes and fees
Total number of reviews
1.8K reviews
Wifi availability
30 properties include access to wifi
Popular amenities
Kitchen, Wifi, and Pool
Local attractions
Shinjuku Station, Shin-Okubo Station, and Lumine the Yoshimoto
Destinations to explore
- Hotel rentals Shinjuku
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- Boutique hotel rentals Tokyo Prefecture
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- Asakusa Sta.
- Oshiage Sta.
- Senso-ji Temple
- Tokyo Skytree
- Akihabara Sta.
- Shibuya Station
- Tokyo Sta.
- Kinshicho Sta.
- Tokyo Disney Resort
- Ikebukuro Station
- Tokyo Disneyland
- Nippori Sta.
- Ueno Sta.
- Shimo-Kitazawa Sta.
- Tokyo Tower
- Haneda Airport Terminal 1 Sta.
- Yoyogi Park
- Koenji Station
- Kamakura Yuigahama Beach
- Tokyo Dome
- Otsuka Station
- Shinagawa Station
- Kamata Sta.
- Makuhari Station
- Things to do Shinjuku
- Things to do Shinjuku
- Food and drink Shinjuku
- Art and culture Shinjuku
- Tours Shinjuku
- Entertainment Shinjuku
- Sightseeing Shinjuku
- Sports activities Shinjuku
- Things to do Tokyo Prefecture
- Tours Tokyo Prefecture
- Food and drink Tokyo Prefecture
- Sightseeing Tokyo Prefecture
- Wellness Tokyo Prefecture
- Nature and outdoors Tokyo Prefecture
- Sports activities Tokyo Prefecture
- Entertainment Tokyo Prefecture
- Art and culture Tokyo Prefecture
- Things to do Japan
- Wellness Japan
- Food and drink Japan
- Sightseeing Japan
- Tours Japan
- Art and culture Japan
- Entertainment Japan
- Nature and outdoors Japan
- Sports activities Japan